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BuyseTest (version 2.1.3)

Generalized Pairwise Comparisons

Description

Implementation of the Generalized Pairwise Comparisons (GPC) as defined in Buyse (2010) for complete observations, and extended in Peron (2018) to deal with right-censoring. GPC compare two groups of observations (intervention vs. control group) regarding several prioritized endpoints to estimate the probability that a random observation drawn from one group performs better than a random observation drawn from the other group (Mann-Whitney parameter). The net benefit and win ratio statistics, i.e. the difference and ratio between the probabilities relative to the intervention and control groups, can then also be estimated. Confidence intervals and p-values are obtained using permutations, a non-parametric bootstrap, or the asymptotic theory. The software enables the use of thresholds of minimal importance difference, stratification, non-prioritized endpoints (O'Brien test), and can handle right-censoring and competing-risks.

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Install

install.packages('BuyseTest')

Monthly Downloads

803

Version

2.1.3

License

GPL-3

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Maintainer

Brice Ozenne

Last Published

May 7th, 2020

Functions in BuyseTest (2.1.3)

BuyseTest.options

Global options for BuyseTest package
BuyseTest

Generalized Pairwise Comparisons (GPC)
BuyseTest-package

BuyseTest package: Generalized Pairwise Comparisons
BuyseTest.options-methods

Methods for the class "BuyseTest.options"
S4BuysePower-summary

Summary Method for Class "S4BuysePower"
getCount

Extract the Number of Favorable, Unfavorable, Neutral, Uninformative pairs
S4BuysePower-class

Class "S4BuysePower" (output of BuyseTest)
getPairScore

Extract the Score of Each Pair
S4BuyseTest-summary

Summary Method for Class "S4BuyseTest"
iid.prodlim

Extract i.i.d. decomposition from a prodlim model
auc

Estimation of the Area Under the ROC Curve
S4BuysePower-show

Show Method for Class "S4BuysePower"
boot2pvalue

Compute the p.value from the distribution under H1
S4BuyseTest-show

Show Method for Class "S4BuyseTest"
coef.BuyseTestAuc

Extract the AUC Value
confint.BuyseTestAuc

Extract the AUC value with its Confidence Interval
S4BuyseTest-class

Class "S4BuyseTest" (output of BuyseTest)
powerBuyseTest

Performing simulation studies with BuyseTest
constStrata

Strata creation
BuyseTest.options-class

Class "BuyseTest.options" (global setting for the BuyseTest package)
GPC_cpp

C++ function performing the pairwise comparison over several endpoints.
internal-print

internal functions for BuyseTest - display
discreteRoot

Dichotomic search for monotone function
getSurvival

Extract the Survival and Survival Jumps
validFCTs

Check Arguments of a function.
calcIntegralCif_cpp

C++ Function Computing the Integral Terms for the Peron Method in the presence of competing risks (CR).
S4BuyseTest-coef

Coef Method for Class "S4BuyseTest"
S4BuyseTest-confint

Confidence Intervals for Model Parameters
calcIntegralSurv_cpp

C++ Function Computing the Integral Terms for the Peron Method in the survival case.
testArgs

Check Arguments Passed to BuyseTest
getIid

Extract the H-decomposition of the Estimator
simCompetingRisks

Simulation of Gompertz competing risks data for the BuyseTest
internal-initialization

internal functions for BuyseTest - initialization
Simulation function

Simulation of data for the BuyseTest