CAGEr (version 1.14.0)

expressionClasses: Extracting labels of expression classes

Description

Retrieves labels of expression classes of either individual CTSSs or consensus clusters from a CAGEset object.

Usage

expressionClasses(object, what)

Arguments

object

A CAGEset object

what

Which level of expression clustering should be used. Can be either "CTSS" to extract labels of expression classes of individual CTSSs or "consensusClusters" to extract labels of expression classes of consensus clusters.

Value

Returns character vector of labels of expression classes. The number of labels matches the number of expression clusters returned by getExpressionProfiles function.

See Also

getExpressionProfiles plotExpressionProfiles extractExpressionClass

Examples

load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))

exprClasses <- expressionClasses(exampleCAGEset, what = "CTSS")
exprClasses