install_bioc_dependencies

This function installs the latest versions of all Bioconductor packages
required for the report generation, namely:<ul>
<li>AnnotationDbi</li>
<li>KEGGREST</li>
<li>GO.db</li>
</ul>

A first-principle, phylogeny-aware comparative genomics tool for
investigating associations between terms used to annotate genomic
components (e.g., Pfam IDs, Gene Ontology terms,) with quantitative
or rank variables such as number of cell types, genome size, or
density of specific genomic elements. See the project website for
more information, documentation and examples, and
<doi:10.1016/j.patter.2023.100728> for the full paper.

Felipe Campelo

CALANGO

Comparative Analysis with Annotation-Based Genomic Components

Francisco Lobo

Jorge Augusto Hongo

Giovanni Marques de Castro

Gabriel Almeida

install_bioc_dependencies function

<dl><dt>bioc.args</dt>
<dd>list containing further arguments to be passed
down to `BiocManager::install()`.</dd>
<dt>force</dt>
<dd>logical: reinstall already-installed packages?</dd></dl>

Arguments

Install Bioconductor dependencies — install_bioc_dependencies

<dl>

<dt>bioc.args</dt>
<dd>list containing further arguments to be passed
down to `BiocManager::install()`.</dd>


<dt>force</dt>
<dd>logical: reinstall already-installed packages?</dd>

</dl>

install_bioc_dependencies: Install Bioconductor dependencies

Description

Usage

Value

Arguments

Details

Examples