
This <code><a rd-options="CALIB:RGList_CALIB-class" href="/link/RGList_CALIB?package=CALIB&version=1.38.0&to=CALIB%3ARGList_CALIB-class" data-mini-rdoc="CALIB:RGList_CALIB-class::RGList_CALIB">RGList_CALIB</a></code> object
represents microarray data of two arrays.
 
It is generated by function <code><a rd-options="" href="/link/read.rg?package=CALIB&version=1.38.0" data-mini-rdoc="CALIB::read.rg">read.rg</a></code>
from raw data files.


datasets

This package contains functions for normalizing spotted
microarray data, based on a physically motivated calibration
model. The model parameters and error distributions are estimated
from external control spikes.

Hui Zhao

CALIB

Calibration model for estimating absolute expression
levels from microarray data

RG function

<code>RG</code> is an <code>RGList_CALIB</code> object containing the following list components:
\$R,\$G,\$Rb,\$Gb,\$RArea,\$GArea,\$targets,\$source and \$genes. It represents
two microarrays and 19749 clones.

Format

This comes from a publicly avaible dataset, consisting 14 hybridizations.
From this <code>RG</code>, two out of these fourteen are chosen. The experiment design 
of these two are color flip. Except for cDNA probes, external control spikes 
are also spotted on the arrays. There are 192 ratio controls, 480 calibration 
controls,24 negative controls and 72 utility controls. For more information, see the reference.

Source

This <code><a href="RGList_CALIB" rd-options="CALIB:RGList_CALIB-class">RGList_CALIB</a></code> object
represents microarray data of two arrays. 
It is generated by function <code><a href="read.rg" rd-options="">read.rg</a></code>
from raw data files.

RG: Experiment Data: RGList\_CALIB Example

Description

Usage

Arguments

Format

Source

References

Examples