
ParameterList
object
represents calibration
model parameters of two arrays. It was estimated from the dataset
spike
by the function estimateParameter
in the CALIB package.
data(parameter)
parameter
is a ParameterList
object containing the following list
components:$MuS,$Ka,$P1,$P2,$SigmaA,$SigmaM,$SigmaS,$SpotError,$Method
with two subfields $Method$BC and $Method$Area, $ErrorModel and $genes.
Among these parameters,P1,P2 and SigamA are different for different dyes.spike
.Engelen, K., Naudts, B., DeMoor, B., Marchal, K. (2006) A calibration method for estimating absolute expression levels from microarray data. Bioinformatics 22: 1251-1258.
Hilson,P.,et al. (2004) Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res. 14, 2176-2189.