spike


This <code><a rd-options="CALIB:SpikeList-class" href="/link/SpikeList?package=CALIB&version=1.38.0&to=CALIB%3ASpikeList-class" data-mini-rdoc="CALIB:SpikeList-class::SpikeList">SpikeList</a></code> object contains all
the spikes in dataset
 
<code><a rd-options="CALIB" href="/link/RG?package=CALIB&version=1.38.0&to=CALIB" data-mini-rdoc="CALIB::RG">RG</a></code>.It is generated by the function
<code><a rd-options="CALIB" href="/link/read.spike?package=CALIB&version=1.38.0&to=CALIB" data-mini-rdoc="CALIB::read.spike">read.spike</a></code> from <code>RG</code> and
user-specified concentraion file in the CALIB package.


datasets

This package contains functions for normalizing spotted
microarray data, based on a physically motivated calibration
model. The model parameters and error distributions are estimated
from external control spikes.

Hui Zhao

CALIB

Calibration model for estimating absolute expression
levels from microarray data

spike function

<code>spike</code> is an <code>SpikeList</code> object containing the following list components:
\$R,\$G,\$Rb,\$Gb,\$RArea,\$GArea,\$RConc,\$GConc and \$genes. It represents two
microarrays and 600 spikes, including 480 calibration controls, 96 ratio
controls and 24 negative controls.

Format

For the source information, see the introduction of dataset <code>RG</code>.

Source

This <code><a href="SpikeList" rd-options="CALIB:SpikeList-class">SpikeList</a></code> object contains all
the spikes in dataset 
<code><a href="RG" rd-options="CALIB">RG</a></code>.It is generated by the function<code><a href="read.spike" rd-options="CALIB">read.spike</a></code> from <code>RG</code> and
user-specified concentraion file in the CALIB package.

spike: Experiment Data: SpikeList Example

Description

Usage

Arguments

Format

Source

References

Examples