quant

<p>the path of the annotation file and it has to be a FASTA formatted file.</p>

ref_path

fastq_path

<p>A C++ function to quantify sgRNA abundance from NGS samples.</p>

Provides functions for hit gene identification and  quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis.
Details are in Jeong et al. (2018) <doi:10.1101/309302> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.

quant: A C++ function to quantify sgRNA abundance from NGS samples.

Description

Usage

Arguments