CB2 (version 1.3.4)

plot_dotplot: A function to visualize dot plots for a gene.

Description

A function to visualize dot plots for a gene.

Usage

plot_dotplot(sgcount, df_design, gene, ge_id = NULL, sg_id = NULL)

Arguments

sgcount

The input matrix contains read counts of sgRNAs for each sample.

df_design

The table contains a study design.

gene

The gene to be shown.

ge_id

A name of the column contains gene names.

sg_id

A name of the column contains sgRNA IDs.

Value

A ggplot2 object contains dot plots of sgRNA read counts for a gene.

Examples

# NOT RUN {
library(CB2)
data(Evers_CRISPRn_RT112)
plot_dotplot(get_CPM(Evers_CRISPRn_RT112$count), Evers_CRISPRn_RT112$design, "RPS7")

# }