quant

the path of the annotation file and it has to be a FASTA formatted file.

ref_path

fastq_path

Display some logs during the quantification if it is set to `true`.

verbose

A C++ function to quantify sgRNA abundance from NGS samples.

Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis.
Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.

quant: A C++ function to quantify sgRNA abundance from NGS samples.

Description

Usage

Arguments