readCohortSet

A "cohort set" is a collection of cohort definitions. In R this is stored in
a dataframe with cohort_definition_id, cohort_name, and cohort columns.
On disk this is stored as a folder with a CohortsToCreate.csv file and
one or more json files, or as a single .json file.
If the CohortsToCreate.csv file is missing then all of the json files in the
folder will be used, cohort_definition_id will be automatically assigned
in alphabetical order, and cohort_name will match the file names.
You may also pass the path to a single .json file to read one cohort.

Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.

Adam Black

CDMConnector

Connect to an OMOP Common Data Model

Artem Gorbachev

Edward Burn

Marti Catala Sabate

Ioanna Nika

readCohortSet function

<dl><dt>path</dt>
<dd>The path to a folder containing Circe cohort definition
json files (and optionally a csv file named CohortsToCreate.csv with columns
cohortId, cohortName, and jsonPath), or the path to a single .json file.</dd></dl>

Arguments

Read a set of cohort definitions into R — readCohortSet

<dl>

<dt>path</dt>
<dd>The path to a folder containing Circe cohort definition
json files (and optionally a csv file named CohortsToCreate.csv with columns
cohortId, cohortName, and jsonPath), or the path to a single .json file.</dd>

</dl>

readCohortSet: Read a set of cohort definitions into R

Description

Usage

Arguments