gene2rpkm

CDSeq-estimated GEP normalized by gene length.

gene_rate

gene effective length which is the gene length minus the read length plus one.

gene_effective_length

RNA-Seq read counts data of cell lines

cell_line_counts

gene2rpkm outputs the rpkm normalizations of the CDSeq-estimated GEPs.
<code>gene2rpkm</code> outputs the rpkm normalizations of the CDSeq-estimated GEPs.

Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) <doi:10.1371/journal.pcbi.1007510>.

Kai Kang

CDSeq

A Complete Deconvolution Method using Sequencing Data

Caizhi Huang

Qian Meng

Igor Shats

Melissa Li

David Umbach

Leping Li

Yuanyuan Li

Xiaoling Li

gene2rpkm function

gene2rpkm outputs the rpkm normalizations of the CDSeq-estimated GEPs.
<code>gene2rpkm</code> outputs the rpkm normalizations of the CDSeq-estimated GEPs. — gene2rpkm

gene2rpkm outputs the rpkm normalizations of the CDSeq-estimated GEPs.
<code>gene2rpkm</code> outputs the rpkm normalizations of the CDSeq-estimated GEPs.

gene2rpkm: gene2rpkm outputs the rpkm normalizations of the CDSeq-estimated GEPs. `gene2rpkm` outputs the rpkm normalizations of the CDSeq-estimated GEPs.

Description

Usage

Arguments

Value