read2gene

CDSeq-estimated GEP before normalized by gene length.

read_rate

gene effective length which is the gene length minus the read length plus one.

gene_effective_length

read2gene outputs the GEP normalized by gene length of the CDSeq-estimated GEPs.
<code>read2gene</code> outputs the gene length normalized CDSeq-estimated GEP.

Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) <doi:10.1371/journal.pcbi.1007510>.

Kai Kang

CDSeq

A Complete Deconvolution Method using Sequencing Data

Caizhi Huang

Qian Meng

Igor Shats

Melissa Li

David Umbach

Leping Li

Yuanyuan Li

Xiaoling Li

read2gene function

read2gene outputs the GEP normalized by gene length of the CDSeq-estimated GEPs.
<code>read2gene</code> outputs the gene length normalized CDSeq-estimated GEP. — read2gene

read2gene outputs the GEP normalized by gene length of the CDSeq-estimated GEPs.
<code>read2gene</code> outputs the gene length normalized CDSeq-estimated GEP.

read2gene: read2gene outputs the GEP normalized by gene length of the CDSeq-estimated GEPs. `read2gene` outputs the gene length normalized CDSeq-estimated GEP.

Description

Usage

Arguments

Value