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CGNM (version 0.9.0)

Cluster Gauss-Newton Method

Description

Find multiple solutions of a nonlinear least squares problem. Cluster Gauss-Newton method does not assume uniqueness of the solution of the nonlinear least squares problem and compute multiple minimizers. Please cite the following paper when this software is used in your research: Aoki et al. (2020) . Cluster Gauss–Newton method. Optimization and Engineering, 1-31. Please cite the following paper when profile likelihood plot is drawn with this software and used in your research: Aoki and Sugiyama (2024) . Cluster Gauss-Newton method for a quick approximation of profile likelihood: With application to physiologically-based pharmacokinetic models. CPT Pharmacometrics Syst Pharmacol.13(1):54-67.

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Version

Install

install.packages('CGNM')

Monthly Downloads

769

Version

0.9.0

License

MIT + file LICENSE

Maintainer

Yasunori Aoki

Last Published

June 12th, 2024

Functions in CGNM (0.9.0)

plot_profileLikelihood

plot_profileLikelihood
plot_paraDistribution_byViolinPlots

plot_paraDistribution_byViolinPlots
plot_simulationWithCI

plot_simulationWithCI
plot_parameterValue_scatterPlots

plot_parameterValue_scatterPlots
plot_SSR_parameterValue

plot_SSR_parameterValue
plot_simulationMatrixWithCI

plot_simulationMatrixWithCI
plot_goodnessOfFit

plot_goodnessOfFit
plot_paraDistribution_byHistogram

plot_paraDistribution_byHistogram
shinyCGNM

shinyCGNM
table_parameterSummary

table_parameterSummary
suggestInitialLowerRange

suggestInitialLowerRange
suggestInitialUpperRange

suggestInitialUpperRange
table_profileLikelihoodConfidenceInterval

table_profileLikelihoodConfidenceInterval
plot_SSRsurface

plot_SSRsurface
topIndices

topIndices
acceptedIndices

acceptedIndices
Cluster_Gauss_Newton_Bootstrap_method

Cluster_Gauss_Newton_Bootstrap_method
col_quantile

col_quantile
plot_Rank_SSR

plot_Rank_SSR
bestApproximateMinimizers

bestApproximateMinimizers
acceptedApproximateMinimizers

acceptedApproximateMinimizers
acceptedIndices_binary

acceptedIndices_binary
Cluster_Gauss_Newton_method

Cluster_Gauss_Newton_method
plot_2DprofileLikelihood

plot_2DprofileLikelihood
acceptedMaxSSR

acceptedMaxSSR