CHRONOS (version 1.0.3)

convertNomenclature: Convert genes identifier nomenclature.

Description

Convert genes identifier nomenclature.

Usage

convertNomenclature(ids, org, from, to)

Arguments

ids

Vector of gene identifiers

org

KEGG organism identifier

from

Initial identifier type

to

A vector of final identifier types

Value

Vector of converted gene identifiers

Details

EntrezGene ID

'entrezgene'

Ensembl Gene ID

'ensembl_gene_id'

Ensemble Transcript ID

'ensembl_transcript_id'

Ensemble Protein ID

'ensembl_peptide_id'

HGNC ID

'hgnc_id'

HGNC Symbol

'hgnc_symbol'

HGNC Transcript name

'hgnc_transcript_name'

Refseq mRNA ID

'refseq_mrna'

Refseq Protein ID

'refseq_peptide'

UniProt/Swissprot Accession

'uniprot_swissprot_accession'

UniProt/Swissprot ID

'uniprot_swissprot'

UniGene ID

'unigene'

Examples

# Identifiers to be converted
ids <- c('5091', '5105')

# Convert to HGNC ID, Ensembl Gene ID and UniProt Genename ID
from <- 'entrezgene'
to <- c('hgnc_symbol','ensembl_gene_id', 'uniprot_genename')
## Not run: res <- convertNomenclature(ids=ids, org='hsa', from=from, to=to)