downloadPathways

Download pathways for specified organism: 
<table><tr><td>
    </td>
<td> 'All' </td>
</tr><tr><td>  All organism pathways</td>
<td>
    </td>
</tr><tr><td> 'Metabolic' </td>
<td>  Metabolic pathways</td>
</tr><tr><td>
    </td>
<td> 'Non-Metabolic' </td>
</tr><tr><td>  Non metabolic pathways</td>
<td>
    </td>
</tr><tr><td> <vector of="" indexes=""> </vector></td>
<td>  Using indexes from 
    <code><a rd-options="" href="/link/downloadKEGGPathwayList?package=CHRONOS&version=1.0.3" data-mini-rdoc="CHRONOS::downloadKEGGPathwayList">downloadKEGGPathwayList</a></code></td>
</tr></table>

pathways

A package used for efficient unraveling of the inherent
dynamic properties of pathways. MicroRNA-mediated subpathway
topologies are extracted and evaluated by exploiting the
temporal transition and the fold change activity of the linked
genes/microRNAs.

Panos Balomenos

CHRONOS

CHRONOS: A time-varying method for microRNA-mediated sub-pathway
enrichment analysis

downloadPathways function

Download pathways for specified organism: 
<tabular>rrl</tabular>{
    	'All' 	All organism pathways	'Metabolic' 	Metabolic pathways	'Non-Metabolic' 	Non metabolic pathways	<vector of indexes> 	Using indexes from 
    <code><a href="downloadKEGGPathwayList" rd-options="">downloadKEGGPathwayList</a></code>	<vector of names> 	Using pathway identifiers 
    (i.e. c('00010', '00020'))
}

downloadPathways: Download KEGG pathways in KGML format.

Description

Usage

Arguments

Value

Details

References

Examples

	'All'
All organism pathways
'Metabolic'	Metabolic pathways
	'Non-Metabolic'
Non metabolic pathways
	Using indexes from `downloadKEGGPathwayList`