CHRONOS (version 1.0.3)

pathwayMeasures: Pathway structural and functional aspects

Description

Pathway structural and functional aspects

Usage

pathwayMeasures(graphs)

Arguments

graphs

Pathway graphs as returned from createPathwayGraphs.

Value

Matrix with pathness, betweeness centrality and degree values for each gene in the pathway graphs at it's columns.

Details

Structural and functional aspects of a pathway are calculated in respect to all organism pathways.

Examples

# Load pathway graphs from toy data
load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))

# Calculate pathway structural and functional aspects
measures <- pathwayMeasures(graphs)