CHRONOS (version 1.0.3)

subpathwayKEGGmap: Create links to KEGG pathway map with highlighted subpathways.

Description

Create links to KEGG pathway map with highlighted subpathways.

Usage

subpathwayKEGGmap(subpathways, type, openInBrowser)

Arguments

subpathways

Subpathways as returned by extractLinearSubpathways or extractNonLinearSubpathways

type

Subpathway type (Linear, Non-Linear)

openInBrowser

Open link in default browser.

Value

Vector of links of KEGG pathway maps.

Examples

# Load extracted linear subpathways from toy data
load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))

# Opening selected subpathways in default browser
subs <- linSubs$subpaths[1:3, ]

subpathwayKEGGmap(subpathways=subs, type='Linear', openInBrowser=FALSE)