CIARA (version 0.1.0)

cluster_analysis_sub: cluster_analysis_sub

Description

cluster_analysis_sub

Usage

cluster_analysis_sub(
  raw_counts,
  resolution,
  neighbors,
  max_dimension,
  name_cluster
)

Arguments

raw_counts

Raw count matrix (n_genes X n_cells).

resolution

Numeric value specifying the parameter resolution used in the Seurat function FindClusters.

neighbors

Numeric value specifying the parameter k.param in the Seurat function FindNeighbors

max_dimension

Numeric value specifying the maximum number of the PCA dimensions used in the parameter dims for the Seurat function FindNeighbors

name_cluster

Character.Name of the original cluster for which the sub clustering is done.

Value

Seurat object including raw and normalized counts matrices and cluster result.

See Also

https://www.rdocumentation.org/packages/Seurat/versions/4.0.1/topics/RunPCA https://www.rdocumentation.org/packages/Seurat/versions/4.0.1/topics/FindVariableFeatures