ConstructCompleteGraph


matrix. Vertices of constructed graphs, including real vertices and virtual vertices. The first column represents SNP ID or SNP-combination ID. The second column represents effect value. The third column represents the class of vertices, "1" -> real vertice, others -> virtual vertice.


Vertices

Edges


numeric. Basic size of vertices in the graph. By default, BaseSize &lt;- 6.


BaseSize


character. Basic file name for saving figure. By default, SaveFileName &lt;- "".


SaveFileName


This function construct complete graph by using all vertices and edges.


Detecting and visualizing nonlinear interaction effects of single nucleotide polymorphisms or epistatic interactions, especially high-order epistatic interactions, are important topics in bioinformatics because of their significant mathematical and computational challenges. We present CINOEDV (Co-Information based N-Order Epistasis Detector and Visualizer) for detecting, visualizing, and analyzing high-order epistatic interactions by introducing virtual vertices into the construction of a hypergraph. CINOEDV was developed as an alternative to existing software to build a global picture of epistatic interactions and unexpected high-order epistatic interactions, which might provide useful clues for understanding the underlying genetic architecture of complex diseases.

ConstructCompleteGraph: Construct complete graph

Description

Usage

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Examples