CITMIC_Data

<p>matirx_cell_go_inter:A matrix of Jaccard score between cells and GOBP.
matirx_cell_go_jaccard:A matrix consisting of genes shared by cells targets and GOBP.
GEP:An example gene expression profile.</p>

datasets

A systematic biology tool was developed to identify cell infiltration via Individualized Cell-Cell interaction network. 'CITMIC' first constructed a weighted cell interaction network through integrating Cell-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.

Junwei Han

CITMIC

Estimation of Cell Infiltration Based on Cell Crosstalk

Xilong Zhao

CITMIC_Data function

Format

An environment variable that includes some example data — CITMIC_Data

An environment variable that includes some example data

CITMIC_Data: An environment variable that includes some example data

Description

Usage

Arguments

Format