GetData_CITMIC

A systematic biology tool was developed to identify cell infiltration via Individualized Cell-Cell interaction network. 'CITMIC' first constructed a weighted cell interaction network through integrating Cell-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.

Junwei Han

CITMIC

Estimation of Cell Infiltration Based on Cell Crosstalk

Xilong Zhao

GetData_CITMIC function

<dl><dt>Data</dt>
<dd>A character should be one of "GEP", "matrix_cell_go_inter", "matrix_cell_go_jaccard"</dd></dl>

Arguments

GetData_CITMIC — GetData_CITMIC

<dl>

<dt>Data</dt>
<dd>A character should be one of "GEP", "matrix_cell_go_inter", "matrix_cell_go_jaccard"</dd>

</dl>

GetData_CITMIC: GetData_CITMIC

Description

Usage

Value

Arguments