plot,genesel-method

plot,genesel,missing-method

An object of class <code><a rd-options="" href="/link/genesel?package=CMA&version=1.30.0" data-mini-rdoc="CMA::genesel">genesel</a></code>

Number of top genes whose variable importance should be displayed.
             Defaults to 10.

Iteration number (<code>learningset</code>) for which variable
              importance should be displayed.

iter

Further graphical options passed to <code>barplot</code>.

This method can be seen as a visual pendant to
             <code><a rd-options="" href="/link/toplist?package=CMA&version=1.30.0" data-mini-rdoc="CMA::toplist">toplist</a></code>. The plot visualizes
             variable importance by a barplot. The height
             of the barplots correspond to variable importance.
             What variable importance exactly means depends
             on the method chosen when calling <code><a rd-options="" href="/link/GeneSelection?package=CMA&version=1.30.0" data-mini-rdoc="CMA::GeneSelection">GeneSelection</a></code>,
             s. <code><a rd-options="" href="/link/genesel?package=CMA&version=1.30.0" data-mini-rdoc="CMA::genesel">genesel</a></code>.

multivariate

Barplot

This package provides a comprehensive collection of various microarray-based classification algorithms
both from Machine Learning and Statistics.
Variable Selection, Hyperparameter tuning, Evaluation and Comparison can be performed
combined or stepwise in a user-friendly environment.

Christoph Bernau

Synthesis of microarray-based classification

Barplot function

An object of class <code><a href="genesel" rd-options="">genesel</a></code>

Number of top genes whose variable importance should be displayed.
             Defaults to 10.

Iteration number (<code>learningset</code>) for which variable
              importance should be displayed.

This method can be seen as a visual pendant to
             <code><a href="toplist" rd-options="">toplist</a></code>. The plot visualizes
             variable importance by a barplot. The height
             of the barplots correspond to variable importance.
             What variable importance exactly means depends
             on the method chosen when calling <code><a href="GeneSelection" rd-options="">GeneSelection</a></code>,
             s. <code><a href="genesel" rd-options="">genesel</a></code>.

Barplot: Barplot of variable importance

Description

Arguments

Value

References

See Also