CNEr (version 1.8.3)

mismatchSummary: Utility functions related to Axt alignment

Description

A collection of different functions used to deal with Axt object.

Usage

mismatchSummary(x, ...) ## mismatch number and proportion

Arguments

x

An Axt object

...

Currently not used.

Details

'mismatchSummary': a numeric vector giving the numner of mismatches and the proportion of mismatches.

Examples

  axtFilesHg19DanRer7 <- file.path(system.file("extdata", package="CNEr"),
                                   "hg19.danRer7.net.axt")
  axtHg19DanRer7 <- readAxt(axtFilesHg19DanRer7)
  mismatchSummary(axtHg19DanRer7)