madFilter-method

madFilter

madFilter,ANY-method

madFilter,RS-method


  <code>madFilter</code> calculates the mean absolute deviation across samples for each rows and drops rows that are not above percentile defined by a user 


methods

madFilter-methods

This package provides tools to convert the output of
segmentation analysis using DNAcopy to a matrix structure with
overlapping segments as rows and samples as columns so that
other computational analyses can be applied to segmented data

J Zhang

CNTools

Convert segment data into a region by sample matrix to allow for
other high level computational analyses.

madFilter-methods function

<dl> <dt>object = "ANY"</dt><dd>not iimplemented yet</dd> <dt>object = "RS"</dt><dd>method that handles RS objects</dd> </dl>

Methods

<code>madFilter</code> calculates the mean absolute deviation across samples for each rows and drops rows that are not above percentile defined by a user

madFilter-methods: Method that filters reduced segment matrix by the mean absolute deviation

Description

Arguments

Methods