IndexMultipleBams


    A character vector of bam files to be indexed
  

bams

index_type


    Index a list of bam files if there is no index exists for the file entries in the list.


A method that allows for the use of a collection of non-matched
normal tissue samples. Our approach uses a non-parametric bootstrap
subsampling of the available reference samples to estimate the distribution
of read counts from targeted sequencing. As inspired by random forest, this
is combined with a procedure that subsamples the amplicons associated with
each of the targeted genes. The obtained information allows us to reliably
classify the copy number aberrations on the gene level.

Thomas Wolf

CNVPanelizer

Reliable CNV detection in targeted sequencing applications

IndexMultipleBams function

A character vector of bam files to be indexed

Index a list of bam files if there is no index exists for the file entries in the list.

IndexMultipleBams: IndexMultipleBams

Description

Usage

Arguments

Value

Examples