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CNVRG

**Beta release This is the first release of this software. Please let us know if you find any errors.

A package to provide a user-friendly wrapper for 'RStan' to implement Dirichlet-multinomial modeling of relative abundance count data. For vignette information see below.

A github repo for this package exists at: https://github.com/JHarrisonEcoEvo/CNVRG Please check that repo out for new versions of this software that are under development. Also, if you discover issues or have questions please post them there so that others may benefit from answers.

To install from source. Download repo and unzip it then use the following command from within the 'R' interpreter. Change the path to the 'CNVRG' directory as appropriate.

install.packages("./CNVRG/", repos = NULL, type = "source")

VIGNETTE

Please view the pdf vignette available at the repo linked above.

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Version

Install

install.packages('CNVRG')

Monthly Downloads

207

Version

0.1

License

GPL-3

Maintainer

Joshua Harrison

Last Published

September 16th, 2020

Functions in CNVRG (0.1)

isd_transform

@encoding UTF-8 Transform data into estimates of absolute abundances using an ISD
varInf

@encoding UTF-8 Perform variational inference sampling
CNVRG-package

The 'CNVRG' package.
varHMC

@encoding UTF-8 Perform Hamiltonian Monte Carlo sampling
extract_point_estimate

@encoding UTF-8 Extract point estimates of pi parameters
diff_abund

@encoding UTF-8
fungi

Fungal endophytes of Astragalus lentiginosus grown near Reno, NV
diversity_calc

@encoding UTF-8 Calculate diversity entropies for each replicate