CNVScope (version 2.9.2)

getInterchromosomalInteractivePlot: Create an HTML widget for use in shiny or webshot for a given pair of chromosomes.

Description

This function requires a matrix with genomic coordinates in the row and column names, and produces a heatmap with a tooltip

Arguments

whole_matrix

the large, whole genomic matrix from which the submatrix is taken (rows)

chrom1

The first chromsome used for the map (columns).

chrom2

The second chromsome used for a map axis.

Value

An HTML widget.

Examples

# NOT RUN {
load(system.file("extdata","nbl_result_matrix_sign_small.rda",package = "CNVScope")) 
getInterchromosomalInteractivePlot(whole_matrix=nbl_result_matrix_sign_small,chrom1=1,
chrom2=1)
# }