CNVScope (version 3.7.2)

runCNVScopeShiny: Runs the CNVScope plotly shiny application.

Description

Runs the interactive suite of tools locally or on a server if called in a script file (e.g. App.R). Data sources are required. For a simple installation, please use the runCNVScopeLocal function.

Usage

runCNVScopeShiny(
  baseurl = NULL,
  basefn = NULL,
  osteofn = NULL,
  debug = F,
  useCNVScopePublicData = F
)

Arguments

baseurl

the url of the source files for the application (e.g. the contents of plotly_dashboard_ext). This will be pulled from remotely.

basefn

the linux file path of the same source files.

osteofn

the linux file path of the OS files.

debug

Enable debugging output.

useCNVScopePublicData

Use files from the CNVScopePublicData package.

Value

none. Runs the application if the correct files are present.

Examples

# NOT RUN {
#see runCNVScopeLocal(useCNVScopePublicData=T).
# }
# NOT RUN {
runCNVScopeShiny(useCNVScopePublicData=T)
# }