dataMLPA

This data set contains data from a MLPA assay for a case-control study. The data has intensities for two genes that can be used to infer copy number status. It also contains the TRUE copy number status obtained by using PCR technology.

datasets

This package carries out association analysis of common
        copy number variants in population-based studies. This package
        includes functions for analysing association under a series of
        study designs (case-control, cohort, etc), using several
        dependent variables (class status, censored data, counts) as
        response, adjusting for covariates and considering various
        inheritance models. It also includes functions for inferring
        copy number (CNV genotype calling).  Various classes and
        methods for generic functions (print, summary, plot, anova, ...
        ) have been created to facilitate the analysis.

Juan Gonzalez

CNVassoc

Association analysis of CNV data

dataMLPA function

dataMLPA is a data.frame with the following columns:
  <tabular>ll</tabular>{
	id 	The unique identifiers of individuals casco 	Case-control stauts 0:control 1:case Gene1 	Intensities for Gene1 Gene2 	Intensities for Gene2 PCR.Gene1 	True copy number status for Gene1PCR.Gene2 	True copy number status for Gene2quanti 	Simulated continuos variable. It was generated to illustrate how to perform association analysis between a CNV and continuous traits cov 	Simulated continuous variable. It was generated to illustrate how to perform association adjusting for covariates }

format

This data set was generated and kindly provided by Estivill's lab. The data is still unpublished and it has been made available in a blinded format for reproducing the findings presented in the paper

dataMLPA: MLPA data

Description

Usage

Arguments

format

source

References