segmentSamples

Object


Segment read-count windows into region having similar signal values by
using the DNAcopy package (Venkatraman and Olshen, 2007) and refine this process 
to obtain segmentation scores at genes.<p></p><p>
</p>

methods

CNVrd2 uses next-generation sequencing data to measure human gene copy number for multiple samples,
indentify SNPs tagging copy number variants and detect copy
number polymorphic genomic regions.

Hoang Tan Nguyen

CNVrd2

CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.

segmentSamples function

Segment read-count windows into region having similar signal values by
using the DNAcopy package (Venkatraman and Olshen, 2007) and refine this process 
to obtain segmentation scores at genes.

Implement the segmentation process

segmentResults

Segmentation scores of the gene(s) being measured.

segmentationScores

Observed read-count ratios of genes. This value is a matrix of observed read-count ratios at genes if (only inputBamFile = TRUE).

segmentSamples: Implement the segmentation process

Description

Usage

Arguments

Value

References

See Also

Examples