cnpexample

A table of genomic positions for DNA copy-number changing events, collected 
from genomes of 1203 individuals 
using Representational Oligonucleotide Microarray Analysis (ROMA) 
platform.

datasets

The package evaluates DNA copy number data, using both
        their intitial form (copy number as a noisy function of genomic
        position) and their approximation by a piecewise-constant
        function (segmentation), for the purpose of identifying genomic
        regions where the copy number differs from the norm.

Guoli Sun

CNprep

pre-process DNA copy number (CN) data for detection of CN events

cnpexample function

Strong association of de novo copy number mutations with autism.
Sebat J, Lakshmi B, Malhotra D, Troge J, Lese-Martin C, Walsh T, Yamrom B, 
Yoon S, Krasnitz A, Kendall J, Leotta A, Pai D, Zhang R, Lee YH, Hicks J, 
Spence SJ, Lee AT, Puura K, Lehtimaki T, Ledbetter D, Gregersen PK, Bregman J, 
Sutcliffe JS, Jobanputra V, Chung W, Warburton D, King MC, Skuse D, 
Geschwind DH, Gilliam TC, Ye K, Wigler M.
Science. 2007 Apr 20;316(5823):445-9.

cnpexample: Example of a boundary positions table.

Description

Usage

Arguments

source

Examples