annotexample

Whole genome annotation table using Representational Oligonucleotide Microarray
Analysis (ROMA) CGH platform, human genome version 17.

datasets

DNA copy number data evaluation using both their initial form
(copy number as a noisy function of genomic position) and their
approximation by a piecewise-constant function (segmentation),
for the purpose of identifying genomic regions where the copy number
differs from the norm.

Guoli Sun

CNprep

Pre-Process DNA Copy Number (CN) Data for Detection of CN Events

annotexample function

A data frame with 83055 observations on the following 3 variables.<dl class="dl-horizontal">
 <dt><code>PROBEID</code></dt><dd>a character vector</dd>
 <dt><code>CHROM</code></dt><dd>a numeric vector</dd>
 <dt><code>CHROM.POS</code></dt><dd>a numeric vector</dd>
 </dl>

Format

Annotation table for ROMA CGH platform and human genome version 17. — annotexample

A data frame with 83055 observations on the following 3 variables.<dl class='dl-horizontal'>
 <dt><code>PROBEID</code></dt><dd>a character vector</dd>
 <dt><code>CHROM</code></dt><dd>a numeric vector</dd>
 <dt><code>CHROM.POS</code></dt><dd>a numeric vector</dd>
 </dl>

annotexample: Annotation table for ROMA CGH platform and human genome version 17.

Description

Usage

Arguments

Format

Details

Examples