normsegs

A table of segment lengths and log copy number ratios for a large set of
human diploid genomes.

datasets

DNA copy number data evaluation using both their initial form
(copy number as a noisy function of genomic position) and their
approximation by a piecewise-constant function (segmentation),
for the purpose of identifying genomic regions where the copy number
differs from the norm.

Guoli Sun

CNprep

Pre-Process DNA Copy Number (CN) Data for Detection of CN Events

normsegs function

A data matrix with 43497 rows/segments and 2 columns/variables.<dl class="dl-horizontal">
 <dt><code>length</code></dt><dd>a numeric vector of segment genomic length</dd>
 <dt><code>segmedian</code></dt><dd>a numeric vector of segment median computed 
 from log copy number ratio</dd>
</dl>

Format

A reference set of segments — normsegs

A data matrix with 43497 rows/segments and 2 columns/variables.<dl class='dl-horizontal'>
 <dt><code>length</code></dt><dd>a numeric vector of segment genomic length</dd>
 <dt><code>segmedian</code></dt><dd>a numeric vector of segment median computed 
 from log copy number ratio</dd>
</dl>

normsegs: A reference set of segments

Description

Usage

Arguments

Format

Details

Examples