CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
Description
This package provides a pipeline to analyze
single-nucleotide resolution methylation data (Illumina 450k
methylation array, targeted BS-Seq, etc.). It provides QC
metrics, differential methylation for CpG Sites, differential
methylation for CpG Islands, integration with gene expression
data, and visualization of methylation values.