COMBAT (version 0.0.4)

ld.Rsquare: Linkage Disequilibrium Estimate as Correlation

Description

Compute linkage disequilibrium among SNPs using correlation coefficients.

Usage

ld.Rsquare(x)

Arguments

x

a matrix of SNP genotypes with samples in the rows.

Value

A positive definite correlation matrix.

See Also

gates, vegas, simpleM.