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COMMUNAL (version 1.0)

Robust Selection of Cluster Number K

Description

Facilitates optimal clustering of a data set. Provides a framework to run a wide range of clustering algorithms to determine the optimal number (k) of clusters in the data. Then analyzes the cluster assignments from each clustering algorithm to identify samples that repeatedly classify to the same group. We call these 'core clusters', providing a basis for later class discovery.

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Version

Install

install.packages('COMMUNAL')

Monthly Downloads

2

Version

1.0

License

GPL-2

Maintainer

Albert Chen

Last Published

February 11th, 2015

Functions in COMMUNAL (1.0)

examineCounts

Examine algorithm cluster agreement
plotRange3D

Visualize cluster quality
clusterRange

COMMUNAL convenience harness
COMMUNAL

Run clustering algorithms and evaluate validation metrics.
BRCA.100

Breast Cancer gene expression data.
returnCore

Assign points to core clusters
COMMUNAL-class

Class "COMMUNAL"
BRCA.results

COMMUNAL-package

COmbined Mapping of Multiple clUsteriNg ALgorithms
clusterKeys

Rekey cluster assignments.