COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells

COMPASS is now available on Bioconductor!

Getting Started

Install the release version of COMPASS with:

library(BiocInstaller)
biocLite("COMPASS")

or the development version with:

library(BiocInstaller)
useDevel()
biocLite("COMPASS")

To get an idea of how to use COMPASS, read the vignette.

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Version

1.10.2

License

Artistic-2.0

Maintainer

Greg Finak

Last Published

February 15th, 2017

Functions in COMPASS (1.10.2)

CellCounts

Compute Number of Cells Positive for Certain Cytokine Combinations

melt_

Make a 'Wide' data set 'Long'

pheatmap

A function to draw clustered heatmaps.

transpose_list

Transpose a List

COMPASS-package

COMPASS (Combinatorial Polyfunctionality Analysis of Single-Cells)

shinyCOMPASS

Start a Shiny Application for Visualizing COMPASS Results

COMPASSResult-accessors

COMPASSResult Accessors

FunctionalityScore

Compute the Functionality Score for each subject fit in a COMPASS model

COMPASSDescription

Get and Set the Description for the Shiny Application

Combinations

Generate Combinations

PolyfunctionalityScore

Compute the Polyfunctionality Score for each subject fit in a COMPASS model

print.COMPASSContainer

Print a COMPASSContainer Object

TotalCellCounts

Compute Total Cell Counts

summary.COMPASSResult

Summarize a COMPASSResult Object

Posterior

Retrieve Posterior Measures from a COMPASS fit

shinyCOMPASSDeps

List Shiny Dependencies

GetThresholdedIntensities

Extract Thresholded Intensities from a GatingSet

print.COMPASSResult

Print a COMPASSResult Object

UniqueCombinations

Generate Unique Combinations

COMPASSContainer-data

Simulated COMPASSContainer