TotalCellCounts

data

An expression, evaluated within the metadata, defining
the subset of <code>data</code> over which the counts are computed. If left
unspecified, the counts are computed over all samples.

subset

Boolean; if <code>TRUE</code> we sum over the individual,
to get total counts across samples for each individual.

aggregate


This function is used to compute total cell counts, per individual,
from a <code>COMPASSContainer</code>.


COMPASS is a statistical framework that enables unbiased analysis
of antigen-specific T-cell subsets. COMPASS uses a Bayesian hierarchical
framework to model all observed cell-subsets and select the most likely
to be antigen-specific while regularizing the small cell counts that often
arise in multi-parameter space. The model provides a posterior probability
of specificity for each cell subset and each sample, which can be used to
profile a subject's immune response to external stimuli such as infection
or vaccination.

Greg Finak

COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells

TotalCellCounts function

This function is used to compute total cell counts, per individual,
from a <code>COMPASSContainer</code>.

TotalCellCounts: Compute Total Cell Counts

Description

Usage

Arguments

Examples