CONCUR v1.2

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Copy Number Profile Curve-Based Association Test

Implements a kernel-based association test for copy number variation (CNV) aggregate analysis in a certain genomic region (e.g., gene set, chromosome, or genome) that is robust to the within-locus and across-locus etiological heterogeneity, and bypass the need to define a "locus" unit for CNVs. Brucker, A., et al. (2020) <doi:10.1101/666875>.

Functions in CONCUR

Name Description
covData Pseudo Covariate Data
concur Copy Number Profile Curve-Based Association Test
phenoData Pseudo Phenotype Data
cnvData Pseudo Copy Number Variants Data
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Details

Type Package
Date 2020-3-01
License GPL-2
NeedsCompilation no
Repository CRAN
Encoding UTF-8
RoxygenNote 6.1.1
Collate 'commonAUC.R' 'segLength.R' 'popFunc.R' 'uniqueCombinations.R' 'createDF.R' 'deldup.R' 'CAUCkernel.R' 'cnvData.R' 'compFunc.R' 'dataChecks.R' 'test.qt.R' 'test.bt.R' 'pv_func.R' 'concur.R'
Packaged 2020-03-22 20:53:35 UTC; sthollow
Date/Publication 2020-03-25 15:40:05 UTC

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