get.info

Data table merging gene(s) and operon(s) annotations.

genes.and.ops

Data table reporting accuracy evaluations.

eval

Data table containing the POPs predicted as OPs.

pred.POPs

Data table containing the DOPs predicted as OPs.

pred.DOPs

Data table representing the condition-dependent operon map.

comap

verbose


Get generic info about the door operons that have been confirmed 
by using the ensemble operon classifier.


internal

An implementation of the computational strategy for the
comprehensive analysis of condition-dependent operon maps in prokaryotes
proposed by Fortino et al. (2014) <DOI:10.1186/1471-2105-15-145>.
It uses RNA-seq transcriptome profiles to improve prokaryotic operon map inference.

get.info: Get generic info about the door operons that have been confirmed by using the ensemble operon classifier.

Description

Usage

Arguments