pred.operon.status

gene.pairs

Character vector indicating the type of gene pairs (POPs or DOPs). See <code>select.pops</code> and <code>select.ops.indoor</code>.

type

Numeric values indicating the minimum number of postive votes to classify a gen pair as operon pai. See <code>select.pops</code> and <code>select.ops.indoor</code>.

cons

verbose

List of classifiers. See <code>train.rfs</code>.


Internal function that uses the trained operon classifier to predict the operon status of POPs and DOPs.


internal

An implementation of the computational strategy for the
comprehensive analysis of condition-dependent operon maps in prokaryotes
proposed by Fortino et al. (2014) <DOI:10.1186/1471-2105-15-145>.
It uses RNA-seq transcriptome profiles to improve prokaryotic operon map inference.

pred.operon.status: Predict operon status of gene pairs (e.g., POPs, DOPs,...).

Description

Usage

Arguments