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CONFESS (version 1.0.2)

BatchFluo: BatchFluo

Description

It performs the run effect correction of the cell fluorescence signals by flexmix or 2-way ANOVA.

Usage

BatchFluo(data, maxMix, reference, prior.pi, flex.reps, flexmethod, seed)

Arguments

data
List. A list of transformed and adjusted fluorescence signals.
maxMix
Integer. The maximum number of components to fit into the mixture of regressions model. If maxMix=1 or if the the optimal number of the estimated components is 1, the model reduces to the classical 2-way ANOVA.
reference
Numeric vector. Specifies the runs to be used as baseline (iteratively).
prior.pi
Float. The prior probability to accept a component.
flex.reps
Integer. The iterations of the Expectation-Maximization algorithm to estimate the flexmix model.
flexmethod
Character string. A method to estimate the optimal number of flexmix components. One of "BIC", "AIC", "ICL".
seed
Integer. An optional seed number for the Random Number Generator.

Value

A list of fluorescence signals, mixture components and flexmix model estimates