It estimates the average difference between the original and the CV estimated pseudotimes. For circular path
types, the difference is defined as min(diff,max(pseudotime)-diff). For example assuming 300 cells (thus the
maximum pseudotime is 300) in a circular path, two pseudotimes 1 and 300 differ only by 1 and not by 299.
Usage
aveDiff(data, path.type, maxPseudo)
Arguments
data
Numeric. A vector of pseudotimes whose first element is the originally estimated one (fromt he full data).
path.type
Character. The input of path.type parameter in pathEstimator().
maxPseudo
Numeric. The maximum possible pseudotime.
Value
The average difference between the original and the CV estimated pseudotimes for a sample.