Arguments
data
List. A list of adjusted fluorescence signals in both channels. Typically,
the output of transformFluo().
thresh
Integer. The minimum number of values for a cluster re-estimated by the
change-point analysis.
cmethod
Character string. The change point method to be used. It can be one of "ECP",
(non-parametric) "manualECP" (non-parametric with user-defined numner of change-points) or
"PELT" (Pruned Exact Linear Time; parametric).
sig.level
Float. The significance level below which we do not reject a change point.
Q
Integer. The number of change-points to be kept if CPmethod = "manualECP".
path.type
Character vector. A user-defined vector that characterizes the cell progression dynamics.
The first element can be either "circular" or "A2Z" or "other". If "circular" the path progression is
assummed to exhibit a circle-like behavior. If "A2Z" the path is assumed to have a well-defined start
and a well-defined end point (e.g. a linear progression). If "other" the progression is assumed to be
arbitrary without an obvious directionality.
seed
Integer. An optional seed number for the Random Number Generator.