Usage
plotImages(number, origImg, chaImgs, binChaImgs, stats, pix, log.transform, minDiff, sample, image.type)
Arguments
number
Integer. An index number that regulates the fluorescence estimation procedure.
origImg
Data matrix. The original BF image to be read and processed.
chaImgs
List. A list of the channel images (data matrices) of a sample.
binChaImgs
List. A list of binary segmented channel image data.
stats
List. A series of foreground and background statistics.
pix
List. A list of bright spot coordinates in the channels.
log.transform
Logical. If TRUE the image data are plotted in the log scale.
minDiff
Float. the mu_hat of the H0: image-to-noise ratio =
log(foreground_signal) - log(background_signal) = mu_hat. Rejection of H0
implies that the identified spot is brighter than background. Default is 0.5.
sample
Character string. The sample ID.
image.type
Character string. A triplet of IDs to characterize the type of images under study. They refer to
the ImageType part of the original image or txt file names.