Format
The format is:
List of 2
$ Batch5 :List of 39
..$ index : int [1:246] 1 2 3 4 5 6 7 8 9 10 ...
..$ samples : chr [1:246] "1772-062-248_A01" "1772-062-248_A03" "1772-062-248_A04" "1772-062-248_A06" ...
..$ batch : chr [1:246, 1:2] "1772-062-248" "1772-062-248" "1772-062-248" "1772-062-248" ...
..$ Size : num [1:246] 31 19 152 43 59 21 72 81 31 56 ...
..$ corrected.exprs : num [1:246, 1:2] 26.64 9.5 24.84 15.43 8.04 ...
.. ..- attr(*, "dimnames")=List of 2
.. .. ..$ : NULL
.. .. ..$ : chr [1:2] "Green" "Red"
..$ corrected.transformed.exprs : num [1:246, 1:2] 3.28 2.25 3.21 2.74 2.08 ...
.. ..- attr(*, "dimnames")=List of 2
.. .. ..$ : NULL
.. .. ..$ : chr [1:2] "Green" "Red"
..$ correctedAreas : num [1:246] 3.43 2.94 5.02 3.76 4.08 ...
..$ areacut : num 49
..$ transformation : chr "log"
..$ image.type : chr [1:3] "BF" "Green" "Red"
..$ dateIndex : chr "ThuMar2416:02:312016"
..$ single.batch.analysis : num 5
..$ BGmethod : chr "normexp"
..$ maxMix : num 3
..$ prior.pi : num 0.1
..$ flex.reps : num 5
..$ flexmethod : chr "BIC"
..$ RNG : num 999
..$ GAPgroups : num [1:246, 1:2] 6 4 5 4 4 4 1 4 2 4 ...
..$ clusterFUN : chr "kmeans"
..$ normal.sigma : num 200
..$ centroids : num [1:6, 1:3] 3 6 5 4 2 ...
.. ..- attr(*, "dimnames")=List of 2
.. .. ..$ : NULL
.. .. ..$ : chr [1:3] "Cluster" "Green" "Red"
..$ fixClusters : num 0
..$ Kmax : num 15
..$ B.kmeans : num 5
..$ Path : num [1:6] 3 4 6 2 1 5
..$ Path.type : chr [1:2] "circular" "clockwise"
..$ UpdatedPath : num [1:6] 1 2 3 4 5 6
..$ DataSorts : chr [1:246, 1:2] "-0.0524253515714255" "0.0573114934260645" "-0.0658947839764907" "-0.10952104926524" ...
.. ..- attr(*, "dimnames")=List of 2
.. .. ..$ : NULL
.. .. ..$ : chr [1:2] "Distance" "Pseudotime"
..$ DDHFupdate : logi FALSE
..$ corrected.VStransformed.exprs: num [1:246, 1:2] 90.2 86.4 88.6 88.1 86.4 ...
..$ VSmethod : chr "DDHFmv"
..$ Progression : num [1:246, 1:2] 110 58 229 64 68 51 215 76 166 85 ...
.. ..- attr(*, "dimnames")=List of 2
.. .. ..$ : NULL
.. .. ..$ : chr [1:2] "Pseudotime" "transf.Difference"
..$ Updated.groups : num [1:246] 3 3 6 3 3 3 5 3 4 3 ...
..$ CPs : num [1:5] 22 38 118 169 222
..$ CPmethod : chr "ECP"
..$ CPsig : num 0.01
..$ CPgroups : num 5
..$ CPmingroup : num 15
$ init.path: chr [1:2] "bottom/left" "bottom/left"