CONFESS (version 1.0.2)

zoomInBF: zoomInBF

Description

It estimates the chip characterisrics for BF image modelling

Usage

zoomInBF(img, pattern.search, ImgLimits, chip.type)

Arguments

img

Data matrix. The BF image data.

pattern.search

Integer. A cutoff to find horizontal and vertical lines on the chip.

ImgLimits

Integer. It instructs the algorithm to find spots in a certain central image area. For example, for a 512 x 512 image with cutSides = 50, it will search for spots in the central area [ImgLimits:(512-ImgLimits),ImgLimits:(512-ImgLimits)] of the image matrix.

chip.type

Character string. It specifies the type of Fluidigm chip to be analyzed.

Value

The locations of the straight lines on the chip