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CORE (version 1.0)

Cores of Recurrent Events

Description

given a collection of intervals with integer start and end positions, find recurrently targeted regions and estimate the significance of finding. Randomization is implemented by parallel methods, either using local host machines, or submitting grid engine jobs.

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Version

Install

install.packages('CORE')

Monthly Downloads

272

Version

1.0

License

GPL-2

Maintainer

Guoli Sun

Last Published

June 21st, 2013

Functions in CORE (1.0)

JCORErandomized

containment.indicator

interval.schedule

PCORErandomized

randomEventMoves

JCOREiteration

PCOREiteration

fill.values

makepairs

testInputBoundaries

A table of chromosome boundary positions for DNA copy number analysis
CORE-package

What the package does (short line) ~~ package title ~~
ICORErandomized

overlap.indicator

advanceRNG

ICOREiteration

envelope.indicator

CORE

testInputCORE

A table of DNA copy number gain events observed in 100 individual tumor cells
randomRescaledEventMoves