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CORE (version 1.2)

Cores of Recurrent Events

Description

given a collection of intervals with integer start and end positions, find recurrently targeted regions and estimate the significance of finding. Randomization is implemented by parallel methods, either using local host machines, or submitting grid engine jobs.

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Version

Install

install.packages('CORE')

Monthly Downloads

228

Version

1.2

License

GPL-2

Maintainer

Guoli Sun

Last Published

July 25th, 2013

Functions in CORE (1.2)

JCORErandomized

testInputCORE

A table of DNA copy number gain events observed in 100 individual tumor cells
envelope.indicator

CORE-package

What the package does (short line) ~~ package title ~~
interval.schedule

PCORErandomized

testInputBoundaries

A table of chromosome boundary positions for DNA copy number analysis
advanceRNG

randomEventMoves

CORE

Cores of Recurrent Events
containment.indicator

ICOREiteration

makepairs

PCOREiteration

fill.values

JCOREiteration

overlap.indicator

ICORErandomized

randomRescaledEventMoves