joint.congruent.models

Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.

Bjørn Tore Kopperud

CRABS

Congruent Rate Analyses in Birth-Death Scenarios

Sebastian Höhna

Andrew F. Magee

Jérémy Andréoletti

joint.congruent.models function

<dl><dt>model</dt>
<dd>The reference model. An object of class "CRABS"</dd>
<dt>mus</dt>
<dd>A list of extinction-rate functions</dd>
<dt>lambdas</dt>
<dd>A list of speciation-rate functions</dd>
<dt>keep_ref</dt>
<dd>Whether or not to keep the reference model in the congruent set</dd></dl>

Arguments

Create a set of congruent models — joint.congruent.models

<dl>

<dt>model</dt>
<dd>The reference model. An object of class "CRABS"</dd>


<dt>mus</dt>
<dd>A list of extinction-rate functions</dd>


<dt>lambdas</dt>
<dd>A list of speciation-rate functions</dd>


<dt>keep_ref</dt>
<dd>Whether or not to keep the reference model in the congruent set</dd>

</dl>

joint.congruent.models: Create a set of congruent models

Description

Usage

Value

Arguments

Examples